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Polytect

An R package for digital data clustering

Bioconductor version: 3.24 · Package version: 1.5.0

Polytect is an advanced computational tool designed for the analysis of multi-color digital PCR data. It provides automatic clustering and labeling of partitions into distinct groups based on clusters first identified by the flowPeaks algorithm. Polytect is particularly useful for researchers in molecular biology and bioinformatics, enabling them to gain deeper insights into their experimental results through precise partition classification and data visualization.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Polytect")

Details

MaintainerYao Chen <emmachentar@live.com>
AuthorYao Chen [aut, cre] (ORCID: <https://orcid.org/0000-0001-8172-3996>)
LicenseArtistic-2.0
URLhttps://github.com/emmachenlingo/Polytect
Bug Reportshttps://github.com/emmachenlingo/Polytect/issues
Downloads rank254
Source branchdevel
biocViewsClassification, Clustering, MultiChannel, Software, ddPCR

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagePolytect_1.5.0.tar.gz
Windows binary (x86_64)Polytect_1.5.0.zip
macOS binary (arm64)Polytect_1.5.0.tgz
macOS binary (x86_64)Polytect_1.5.0.tgz
Dependencies

Depends: R (>= 4.4.0)

Imports: stats, utils, grDevices, mvtnorm, sn, dplyr, flowPeaks, ggplot2, tidyverse, cowplot, mlrMBO, DiceKriging, smoof, ParamHelpers, lhs, rgenoud, BiocManager

Suggests: testthat (>= 3.0.0), knitr, rmarkdown, ddPCRclust