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PROPS

PRObabilistic Pathway Score (PROPS)

Bioconductor version: 3.24 · Package version: 1.35.0

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PROPS")

Details

MaintainerLichy Han <lhan2@stanford.edu>
AuthorLichy Han
LicenseGPL-2
Downloads rank472
Source branchdevel
biocViewsBayesian, Classification, GeneExpression, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagePROPS_1.35.0.tar.gz
Windows binary (x86_64)PROPS_1.35.0.zip
macOS binary (arm64)PROPS_1.35.0.tgz
macOS binary (x86_64)PROPS_1.35.0.tgz
Dependencies

Imports: bnlearn, reshape2, sva, stats, utils, Biobase

Suggests: knitr, rmarkdown