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OPWeight

Optimal p-value weighting with independent information

Bioconductor version: 3.24 · Package version: 1.35.0

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OPWeight")

Details

MaintainerMohamad Hasan <shakilmohamad7@gmail.com>
AuthorMohamad Hasan [aut, cre], Paul Schliekelman [aut]
LicenseArtistic-2.0
URLhttps://github.com/mshasan/OPWeight
Downloads rank431
Source branchdevel
biocViewsBiomedicalInformatics, ImmunoOncology, MultipleComparison, RNASeq, Regression, SNP, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageOPWeight_1.35.0.tar.gz
Windows binary (x86_64)OPWeight_1.35.0.zip
macOS binary (arm64)OPWeight_1.35.0.tgz
macOS binary (x86_64)OPWeight_1.35.0.tgz
Dependencies

Depends: R (>= 3.4.0)

Imports: graphics, qvalue, MASS, tibble, stats

Suggests: airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat