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MSstatsBig

MSstats Preprocessing for Larger than Memory Data

Bioconductor version: 3.24 · Package version: 1.11.1

MSstats package provide tools for preprocessing, summarization and differential analysis of mass spectrometry (MS) proteomics data. Recently, some MS protocols enable acquisition of data sets that result in larger than memory quantitative data. MSstats functions are not able to process such data. MSstatsBig package provides additional converter functions that enable processing larger than memory data sets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsBig")

Details

MaintainerAnthony Wu <wu.anthon@northeastern.edu>
AuthorAnthony Wu [aut, cre], Mateusz Staniak [aut], Devon Kohler [aut]
LicenseArtistic-2.0
Downloads rank285
Source branchdevel
biocViewsMassSpectrometry, Proteomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageMSstatsBig_1.11.1.tar.gz
Windows binary (x86_64)MSstatsBig_1.11.1.zip
macOS binary (arm64)MSstatsBig_1.11.1.tgz
macOS binary (x86_64)MSstatsBig_1.11.1.tgz
Dependencies

Imports: arrow, data.table, DBI, dplyr, MSstats, MSstatsConvert, readr, sparklyr, utils, stats

Suggests: testthat, mockery, knitr, rmarkdown

Reverse dependencies

Imports Me (1): MSstatsShiny