LOLA
Locus overlap analysis for enrichment of genomic ranges
Bioconductor version: 3.24 · Package version: 1.43.0
Provides functions for testing overlap of sets of genomic regions with public and custom region set (genomic ranges) databases. This makes it possible to do automated enrichment analysis for genomic region sets, thus facilitating interpretation of functional genomics and epigenomics data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LOLA")Details
| Maintainer | Nathan Sheffield <nathan@code.databio.org> |
| Author | Nathan Sheffield <http://www.databio.org> [aut, cre], Christoph Bock [ctb] |
| License | GPL-3 |
| URL | http://code.databio.org/LOLA |
| Bug Reports | http://github.com/nsheff/LOLA |
| Downloads rank | 726 |
| Source branch | devel |
| biocViews | ChIPSeq, FunctionalGenomics, GeneRegulation, GeneSetEnrichment, GenomeAnnotation, MethylSeq, Sequencing, Software, SystemsBiology |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | LOLA_1.43.0.tar.gz |
| Windows binary (x86_64) | LOLA_1.43.0.zip |
| macOS binary (arm64) | LOLA_1.43.0.tgz |
| macOS binary (x86_64) | LOLA_1.43.0.tgz |
Dependencies
Depends: R (>= 3.5.0)
Imports: BiocGenerics, S4Vectors, IRanges, GenomicRanges, data.table, reshape2, utils, stats, methods
Suggests: parallel, XVector, testthat, knitr, BiocStyle, rmarkdown
Enhances: simpleCache, qvalue, ggplot2