KEGGlincs
Visualize all edges within a KEGG pathway and overlay LINCS data
Bioconductor version: 3.24 · Package version: 1.39.0
See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("KEGGlincs")Details
| Maintainer | Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu> |
| Author | Shana White |
| License | GPL-3 |
| System Requirements | Cytoscape (>= 3.3.0), Java (>= 8) |
| Downloads rank | 506 |
| Source branch | devel |
| biocViews | CellBiology, DataRepresentation, GeneExpression, GraphAndNetwork, KEGG, Network, NetworkInference, Pathways, Software, ThirdPartyClient |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | KEGGlincs_1.39.0.tar.gz |
| Windows binary (x86_64) | KEGGlincs_1.39.0.zip |
| macOS binary (arm64) | KEGGlincs_1.39.0.tgz |
| macOS binary (x86_64) | KEGGlincs_1.39.0.tgz |
Dependencies
Depends: R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db (>= 3.3.0)
Imports: AnnotationDbi, KEGGgraph, igraph, plyr, gtools, httr, RJSONIO, KEGGREST, methods, graphics, stats, utils, XML, grDevices
Suggests: BiocManager (>= 1.20.3), knitr, graph