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GNOSIS

Genomics explorer using statistical and survival analysis in R

Bioconductor version: 3.24 · Package version: 1.11.0

GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GNOSIS")

Details

MaintainerLydia King <l.king18@universityofgalway.ie>
AuthorLydia King [aut, cre] (ORCID: <https://orcid.org/0000-0002-0696-9811>), Marcel Ramos [ctb]
LicenseMIT + file LICENSE
URLhttps://github.com/Lydia-King/GNOSIS/
Bug Reportshttps://github.com/Lydia-King/GNOSIS/issues
Downloads rank357
Source branchdevel
biocViewsGUI, ShinyApps, Software, Survival

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageGNOSIS_1.11.0.tar.gz
Windows binary (x86_64)GNOSIS_1.11.0.zip
macOS binary (arm64)GNOSIS_1.11.0.tgz
macOS binary (x86_64)GNOSIS_1.11.0.tgz
Dependencies

Depends: R (>= 4.3.0), shiny, shinydashboard, shinydashboardPlus, dashboardthemes, shinyWidgets, shinymeta, tidyverse, operator.tools, maftools

Imports: DT, fontawesome, shinycssloaders, cBioPortalData, shinyjs, reshape2, RColorBrewer, survival, survminer, stats, compareGroups, rpart, partykit, DescTools, car, rstatix, fabricatr, shinylogs, magrittr

Suggests: BiocStyle, knitr, rmarkdown