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GEM

GEM: fast association study for the interplay of Gene, Environment and Methylation

Bioconductor version: 3.24 · Package version: 1.39.0

Tools for analyzing EWAS, methQTL and GxE genome widely.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GEM")

Details

MaintainerHong Pan <pan_hong@sics.a-star.edu.sg>
AuthorHong Pan, Joanna D Holbrook, Neerja Karnani, Chee-Keong Kwoh
LicenseArtistic-2.0
Downloads rank405
Source branchdevel
biocViewsDNAMethylation, GUI, GeneExpression, GenomeWideAssociation, MethylSeq, MethylationArray, Regression, SNP, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageGEM_1.39.0.tar.gz
Windows binary (x86_64)GEM_1.39.0.zip
macOS binary (arm64)GEM_1.39.0.tgz
macOS binary (x86_64)GEM_1.39.0.tgz
Dependencies

Depends: R (>= 3.3)

Imports: tcltk, ggplot2, methods, stats, grDevices, graphics, utils

Suggests: knitr, RUnit, testthat, BiocGenerics, rmarkdown, markdown