GA4GHclient
A Bioconductor package for accessing GA4GH API data servers
Bioconductor version: 3.24 · Package version: 1.37.0
GA4GHclient provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GA4GHclient")Details
| Maintainer | Welliton Souza <well309@gmail.com> |
| Author | Welliton Souza [aut, cre], Benilton Carvalho [ctb], Cristiane Rocha [ctb] |
| License | GPL (>= 2) |
| URL | https://github.com/labbcb/GA4GHclient |
| Bug Reports | https://github.com/labbcb/GA4GHclient/issues |
| Downloads rank | 466 |
| Source branch | devel |
| biocViews | DataRepresentation, Software, ThirdPartyClient |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GA4GHclient_1.37.0.tar.gz |
| macOS binary (arm64) | GA4GHclient_1.37.0.tgz |
| macOS binary (x86_64) | GA4GHclient_1.37.0.tgz |
Dependencies
Depends: R (>= 3.5.0), S4Vectors
Imports: BiocGenerics, Biostrings, dplyr, Seqinfo, GenomicRanges, httr, IRanges, jsonlite, methods, VariantAnnotation
Suggests: GenomeInfoDb, AnnotationDbi, BiocStyle, DT, knitr, org.Hs.eg.db, rmarkdown, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
Reverse dependencies
Depends On Me (1): GA4GHshiny