FinfoMDS

Multidimensional Scaling with F-ratio for microbiome visualization

Bioconductor version: 3.24 · Package version: 1.3.0

F-informed MDS is a new multidimensional scaling-based ordination method that configures data distribution based on the F-statistic (i.e., the ratio of dispersion between groups with shared or differing labels).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FinfoMDS")

Details

Maintainer	Soobin Kim <soob.kim00@gmail.com>
Author	Soobin Kim [aut, cre], Hyungseok Kim [aut]
License	GPL-3
URL	https://github.com/soob-kim/FinfoMDS
Bug Reports	https://github.com/soob-kim/FinfoMDS/issues
Downloads rank	210
Source branch	devel
biocViews	DimensionReduction, Microbiome, MultidimensionalScaling, Software, Visualization

Documentation

FinfoMDS: Multidimensional scaling informed by F-statistic

Download

Follow the installation instructions to use this package in your R session.

Source package	FinfoMDS_1.3.0.tar.gz
Windows binary (x86_64)	FinfoMDS_1.3.0.zip
macOS binary (arm64)	FinfoMDS_1.3.0.tgz
macOS binary (x86_64)	FinfoMDS_1.3.0.tgz

Dependencies

Depends: R (>= 4.4.0)

Imports: phyloseq

Suggests: testthat (>= 3.0.0), knitr, rmarkdown, BiocStyle