DominoEffect
Identification and Annotation of Protein Hotspot Residues
Bioconductor version: 3.24 · Package version: 1.33.0
The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DominoEffect")Details
| Maintainer | Marija Buljan <marija.buljan.2@gmail.com>, Peter Blattmann <peter_blattmann@bluewin.ch> |
| Author | Marija Buljan and Peter Blattmann |
| License | GPL (>= 3) |
| Downloads rank | 472 |
| Source branch | devel |
| biocViews | Alignment, Proteomics, SequenceMatching, Software, SomaticMutation |
Download
Follow the installation instructions to use this package in your R session.
| Source package | DominoEffect_1.33.0.tar.gz |
| Windows binary (x86_64) | DominoEffect_1.33.0.zip |
| macOS binary (arm64) | DominoEffect_1.33.0.tgz |
| macOS binary (x86_64) | DominoEffect_1.33.0.tgz |
Dependencies
Depends: R (>= 3.5)
Imports: biomaRt, data.table, utils, stats, Biostrings, pwalign, SummarizedExperiment, VariantAnnotation, AnnotationDbi, Seqinfo, IRanges, GenomicRanges, methods