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DNAshapeR

High-throughput prediction of DNA shape features

Bioconductor version: 3.24 · Package version: 1.41.0

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAshapeR")

Details

MaintainerTsu-Pei Chiu <tsupeich@usc.edu>
AuthorTsu-Pei Chiu and Federico Comoglio
LicenseGPL-2
Downloads rank654
Source branchdevel
biocViewsDNA3DStructure, Software, StructuralPrediction

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageDNAshapeR_1.41.0.tar.gz
Windows binary (x86_64)DNAshapeR_1.41.0.zip
macOS binary (arm64)DNAshapeR_1.41.0.tgz
macOS binary (x86_64)DNAshapeR_1.41.0.tgz
Dependencies

Depends: R (>= 3.4), GenomicRanges

Imports: Rcpp (>= 0.12.1), Biostrings, fields

LinkingTo: Rcpp

Suggests: AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret