DNABarcodes
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
Bioconductor version: 3.24 · Package version: 1.43.0
The package offers a function to create DNA barcode sets capable of correcting insertion, deletion, and substitution errors. Existing barcodes can be analysed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e., assigned to their original reference barcode.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DNABarcodes") Details
| Maintainer | Tilo Buschmann <tilo.buschmann.ac@gmail.com> |
| Author | Tilo Buschmann <tilo.buschmann.ac@gmail.com> |
| License | GPL-2 |
| Downloads rank | 487 |
| Source branch | devel |
| biocViews | Preprocessing, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | DNABarcodes_1.43.0.tar.gz |
| Windows binary (x86_64) | DNABarcodes_1.43.0.zip |
| macOS binary (arm64) | DNABarcodes_1.43.0.tgz |
| macOS binary (x86_64) | DNABarcodes_1.43.0.tgz |
Dependencies
Imports: Rcpp (>= 0.11.2), BH
Reverse dependencies
Suggests Me (1): posDemux