Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Bioconductor version: 3.24 · Package version: 1.41.0
A pipeline for analysing Capture Hi-C data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Chicago")Details
| Maintainer | Mikhail Spivakov <mikhail.spivakov@lms.mrc.ac.uk> |
| Author | Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov |
| License | Artistic-2.0 |
| Downloads rank | 550 |
| Source branch | devel |
| biocViews | Epigenetics, HiC, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Chicago_1.41.0.tar.gz |
| Windows binary (x86_64) | Chicago_1.41.0.zip |
| macOS binary (arm64) | Chicago_1.41.0.tgz |
| macOS binary (x86_64) | Chicago_1.41.0.tgz |
Dependencies
Depends: R (>= 3.3.1), data.table
Imports: matrixStats, MASS, Hmisc, Delaporte, methods, grDevices, graphics, stats, utils
Suggests: argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat, GenomeInfoDb, Rsamtools, GenomicInteractions, GenomicRanges, IRanges, AnnotationHub