CNORdt

Add-on to CellNOptR: Discretized time treatments

Bioconductor version: 3.24 · Package version: 1.55.0

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORdt")

Details

Maintainer	A. MacNamara <aidan.macnamara@ebi.ac.uk>
Author	A. MacNamara
License	GPL-2
Downloads rank	415
Source branch	devel
biocViews	CellBasedAssays, CellBiology, ImmunoOncology, Proteomics, Software, TimeCourse

Documentation

Using multiple time points to train logic models to data

Download

Follow the installation instructions to use this package in your R session.

Source package	CNORdt_1.55.0.tar.gz
Windows binary (x86_64)	CNORdt_1.55.0.zip
macOS binary (arm64)	CNORdt_1.55.0.tgz
macOS binary (x86_64)	CNORdt_1.55.0.tgz

Dependencies

Depends: R (>= 1.8.0), CellNOptR (>= 0.99), abind