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CGEN

An R package for analysis of case-control studies in genetic epidemiology

Bioconductor version: 3.24 · Package version: 3.49.0

This is a package for analysis of case-control data in genetic epidemiology. It provides a set of statistical methods for evaluating gene-environment (or gene-genes) interactions under multiplicative and additive risk models, with or without assuming gene-environment (or gene-gene) independence in the underlying population.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGEN")

Details

MaintainerJustin Lee <jhylee@stanford.edu>
AuthorSamsiddhi Bhattacharjee [aut], Nilanjan Chatterjee [aut], Summer Han [aut], Minsun Song [aut], William Wheeler [aut], Matthieu de Rochemonteix [aut], Nilotpal Sanyal [aut], Justin Lee [cre]
LicenseGPL-2 + file LICENSE
Downloads rank429
Source branchdevel
biocViewsClustering, MultipleComparison, SNP, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageCGEN_3.49.0.tar.gz
Windows binary (x86_64)CGEN_3.49.0.zip
macOS binary (arm64)CGEN_3.49.0.tgz
macOS binary (x86_64)CGEN_3.49.0.tgz
Dependencies

Depends: R (>= 4.0), survival, mvtnorm

Imports: stats, graphics, utils, grDevices

Suggests: cluster