CCAFE
Case Control Allele Frequency Estimation
Bioconductor version: 3.24 · Package version: 1.5.0
Functions to reconstruct case and control AFs from summary statistics. One function uses OR, NCase, NControl, and SE(log(OR)). The second function uses OR, NCase, NControl, and AF for the whole sample.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CCAFE")Details
| Maintainer | Hayley Wolff <hayley.wolff@cuanschutz.edu> |
| Author | Hayley Wolff [cre, aut] |
| License | GPL-3 |
| URL | https://github.com/wolffha/CCAFE/ |
| Bug Reports | https://github.com/wolffha/CCAFE/issues |
| Downloads rank | 337 |
| Source branch | devel |
| biocViews | ComparativeGenomics, Genetics, GenomeWideAssociation, Preprocessing, SNP, Software, WholeGenome |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CCAFE_1.5.0.tar.gz |
| Windows binary (x86_64) | CCAFE_1.5.0.zip |
| macOS binary (arm64) | CCAFE_1.5.0.tgz |
| macOS binary (x86_64) | CCAFE_1.5.0.tgz |
Dependencies
Depends: R (>= 4.4.0)
Imports: dplyr, VariantAnnotation
Suggests: testthat (>= 3.0.0), rmarkdown, markdown, knitr, tidyverse, DescTools, cowplot, BiocStyle, GenomicRanges, SummarizedExperiment, S4Vectors, IRanges