BiocCheck

Bioconductor-specific package checks

Bioconductor version: 3.24 · Package version: 1.49.31

BiocCheck guides maintainers through Bioconductor best practicies. It runs Bioconductor-specific package checks by searching through package code, examples, and vignettes. Maintainers are required to address all errors, warnings, and most notes produced.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocCheck")

Details

Maintainer	Marcel Ramos <marcel.ramos@sph.cuny.edu>
Author	Bioconductor Package Maintainer [aut], Lori Shepherd [aut], Daniel von Twisk [ctb], Kevin Rue [ctb], Marcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>), Leonardo Collado-Torres [ctb], Federico Marini [ctb]
License	Artistic-2.0
URL	https://github.com/Bioconductor/BiocCheck
Bug Reports	https://github.com/Bioconductor/BiocCheck/issues
Downloads rank	2874
Source branch	devel
biocViews	Infrastructure, Software

Documentation

BiocCheck: Ensuring Bioconductor package guidelines

Download

Follow the installation instructions to use this package in your R session.

Source package	BiocCheck_1.49.31.tar.gz
Windows binary (x86_64)	BiocCheck_1.49.31.zip
macOS binary (arm64)	BiocCheck_1.49.31.tgz
macOS binary (x86_64)	BiocCheck_1.49.31.tgz

Dependencies

Depends: R (>= 4.4.0)

Imports: BiocBaseUtils, BiocFileCache, BiocManager, biocViews, callr, cli, codetools, commonmark, graph, httr2, knitr, methods, rvest, stringdist, tools, utils, xml2

Suggests: BiocStyle, curl, devtools, gert, jsonlite, rmarkdown, tinytest, usethis

Reverse dependencies

Imports Me (3): AnnotationHubData, gDRstyle, methodical

Suggests Me (12): ExpoRiskR, GEOfastq, GExPipe, HMP16SData, MainExistingDatasets, packFinder, preciseTAD, ReducedExperiment, scpdata, SpatialArtifacts, SpectralTAD, vennDiagramLab