BadRegionFinder

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

Bioconductor version: 3.24 · Package version: 1.41.0

BadRegionFinder is a package for identifying regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BadRegionFinder")