BREW3R.r
R package associated to BREW3R
Bioconductor version: 3.24 · Package version: 1.9.0
This R package provide functions that are used in the BREW3R workflow. This mainly contains a function that extend a gtf as GRanges using information from another gtf (also as GRanges). The process allows to extend gene annotation without increasing the overlap between gene ids.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BREW3R.r") Details
| Maintainer | Lucille Lopez-Delisle <lucille.delisle@epfl.ch> |
| Author | Lucille Lopez-Delisle [aut, cre] (ORCID: <https://orcid.org/0000-0002-1964-4960>) |
| License | GPL-3 |
| URL | https://github.com/lldelisle/BREW3R.r |
| Bug Reports | https://github.com/lldelisle/BREW3R.r/issues/ |
| Downloads rank | 336 |
| Source branch | devel |
| biocViews | GenomeAnnotation, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | BREW3R.r_1.9.0.tar.gz |
| Windows binary (x86_64) | BREW3R.r_1.9.0.zip |
| macOS binary (arm64) | BREW3R.r_1.9.0.tgz |
| macOS binary (x86_64) | BREW3R.r_1.9.0.tgz |
Dependencies
Imports: GenomicRanges, methods, rlang, S4Vectors, utils
Suggests: testthat (>= 3.0.0), IRanges, knitr, rmarkdown, BiocStyle, rtracklayer