AnVILVRS

Expose the vrs_anvil_toolkit Python package via R

Bioconductor version: 3.24 · Package version: 0.99.19

Process Variant Call Format (VCF) files and perform lookup operations on Genomic Variation Representation Service (GA4GH VRS) identifiers. The GA4GH VRS identifiers provide a standardized way to represent genomic variations, making it easier to exchange and share genomic information.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILVRS")

Details

Maintainer	Marcel Ramos <marcel.ramos@sph.cuny.edu>
Author	Marcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>)
License	Artistic-2.0
URL	https://github.com/Bioconductor/AnVILVRS
Bug Reports	https://github.com/Bioconductor/AnVILVRS/issues
Downloads rank	49
Source branch	devel
biocViews	BiologicalQuestion, Infrastructure, Software, ThirdPartyClient, VariantAnnotation

Documentation

Using AnVIL VRS Toolkit in R

Download

Follow the installation instructions to use this package in your R session.

Source package	AnVILVRS_0.99.19.tar.gz
Windows binary (x86_64)	AnVILVRS_0.99.19.zip
macOS binary (arm64)	AnVILVRS_0.99.19.tgz
macOS binary (x86_64)	AnVILVRS_0.99.19.tgz

Dependencies

Depends: R (>= 4.5.0)

Imports: AnVILGCP, BiocBaseUtils, BiocFileCache, reticulate

Suggests: AnVILBase, BiocStyle, gert, knitr, readr, rmarkdown, tinytest