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ASSET

An R package for subset-based association analysis of heterogeneous traits and subtypes

Bioconductor version: 3.24 · Package version: 2.31.0

An R package for subset-based analysis of heterogeneous traits and disease subtypes. The package allows the user to search through all possible subsets of z-scores to identify the subset of traits giving the best meta-analyzed z-score. Further, it returns a p-value adjusting for the multiple-testing involved in the search. It also allows for searching for the best combination of disease subtypes associated with each variant.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASSET")

Details

MaintainerSamsiddhi Bhattacharjee <sb1@nibmg.ac.in>
AuthorSamsiddhi Bhattacharjee [aut, cre], Guanghao Qi [aut], Nilanjan Chatterjee [aut], William Wheeler [aut]
LicenseGPL-2 + file LICENSE
Downloads rank499
Source branchdevel
biocViewsGenomeWideAssociation, MultipleComparison, SNP, Software, StatisticalMethod

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageASSET_2.31.0.tar.gz
Windows binary (x86_64)ASSET_2.31.0.zip
macOS binary (arm64)ASSET_2.31.0.tgz
macOS binary (x86_64)ASSET_2.31.0.tgz
Dependencies

Depends: R (>= 3.5.0), stats, graphics

Imports: MASS, msm, rmeta

Suggests: RUnit, BiocGenerics, knitr

Reverse dependencies

Depends On Me (1): REBET