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ABSSeq

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: 3.24 · Package version: 1.67.0

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ABSSeq")

Details

MaintainerWentao Yang <wyang@zoologie.uni-kiel.de>
AuthorWentao Yang
LicenseGPL (>= 3)
Downloads rank613
Source branchdevel
biocViewsDifferentialExpression, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageABSSeq_1.67.0.tar.gz
Windows binary (x86_64)ABSSeq_1.67.0.zip
macOS binary (arm64)ABSSeq_1.67.0.tgz
macOS binary (x86_64)ABSSeq_1.67.0.tgz
Dependencies

Depends: R (>= 2.10), methods

Imports: locfit, limma

Suggests: edgeR

Reverse dependencies

Imports Me (1): metaseqR2