Package: mosdef
Title: MOSt frequently used and useful Differential Expression
        Functions
Version: 1.9.0
Authors@R: 
    c(
        person(
            given = "Leon", family = "Dammer", role = c("aut"), 
            email = "lc.dammer@gmail.com", comment = c(ORCID = "0009-0008-4132-7639")
        ),
        person(
            given = "Federico", family = "Marini", role = c("aut", "cre"), 
            email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
        )
    )
Description: This package provides functionality to run a number of
        tasks in the differential expression analysis workflow. This
        encompasses the most widely used steps, from running various
        enrichment analysis tools with a unified interface to creating
        plots and beautifying table components linking to external
        websites and databases. This streamlines the generation of
        comprehensive analysis reports.
Depends: R (>= 4.4.0)
Imports: DT, ggplot2, ggforce, ggrepel, graphics, grDevices, htmltools,
        methods, AnnotationDbi, topGO, GO.db, clusterProfiler, goseq,
        utils, RColorBrewer, rlang, DESeq2, scales,
        SummarizedExperiment, S4Vectors, stats
Suggests: knitr, rmarkdown, macrophage, org.Hs.eg.db, GeneTonic,
        testthat (>= 3.0.0), TxDb.Hsapiens.UCSC.hg38.knownGene,
        BiocStyle
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
URL: https://github.com/imbeimainz/mosdef
BugReports: https://github.com/imbeimainz/mosdef/issues
Config/testthat/edition: 3
biocViews: GeneExpression, Software, Transcription, Transcriptomics,
        DifferentialExpression, Visualization, ReportWriting,
        GeneSetEnrichment, GO
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:03:03 UTC
RemoteUrl: https://github.com/bioc/mosdef
RemoteRef: HEAD
RemoteSha: be5ac3c55d564b8fa242236568a29e147a05f3f4
NeedsCompilation: no
Packaged: 2026-05-15 10:07:43 UTC; root
Author: Leon Dammer [aut] (ORCID: <https://orcid.org/0009-0008-4132-7639>),
  Federico Marini [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Federico Marini <marinif@uni-mainz.de>
Built: R 4.6.0; ; 2026-05-15 10:13:27 UTC; windows
