# Microbiome Time Series Analysis

## Documentation for package ‘miaTime’ version 1.3.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

miaTime-package | 'miaTime' Package.
addBaselineDivergence | Beta diversity between the baseline and later time steps
addBaselineDivergence-method | Beta diversity between the baseline and later time steps
addBimodality | Calculate coefficient of bimodality.
addBimodality-method | Calculate coefficient of bimodality.
addShortTermChange | Short term changes in abundance
addShortTermChange-method | Short term changes in abundance
addStability | Estimate stability
addStability-method | Estimate stability
addStepwiseDivergence | Beta diversity between consecutive time steps
addStepwiseDivergence-method | Beta diversity between consecutive time steps
crohn_survival | Survival microbiome data from 150 individuals with longitudinal measurements
getBaselineDivergence | Beta diversity between the baseline and later time steps
getBaselineDivergence-method | Beta diversity between the baseline and later time steps
getBimodality | Calculate coefficient of bimodality.
getBimodality-method | Calculate coefficient of bimodality.
getShortTermChange | Short term changes in abundance
getShortTermChange-method | Short term changes in abundance
getStability | Estimate stability
getStability-method | Estimate stability
getStepwiseDivergence | Beta diversity between consecutive time steps
getStepwiseDivergence-method | Beta diversity between consecutive time steps
hitchip1006 | HITChip Atlas with 1006 Western Adults
Kumaraswamy2024 | Kumaraswamy2024
miaTime | 'miaTime' Package.
minimalgut | Human Gut Minimal Microbiome Profiling Data
SilvermanAGutData | SilvermanAGutData
temporalMicrobiome20 | Gut Microbiome Profiling 20 Belgian Women