Package: meshes
Title: MeSH Enrichment and Semantic analyses
Version: 1.39.0
Authors@R: c( person(given = "Guangchuang", family = "Yu",        email = "guangchuangyu@gmail.com",   role = c("aut", "cre")))
Description: MeSH (Medical Subject Headings) is the NLM controlled
        vocabulary used to manually index articles for MEDLINE/PubMed.
        MeSH terms were associated by Entrez Gene ID by three methods,
        gendoo, gene2pubmed and RBBH. This association is fundamental
        for enrichment and semantic analyses. meshes supports
        enrichment analysis (over-representation and gene set
        enrichment analysis) of gene list or whole expression profile.
        The semantic comparisons of MeSH terms provide quantitative
        ways to compute similarities between genes and gene groups.
        meshes implemented five methods proposed by Resnik, Schlicker,
        Jiang, Lin and Wang respectively and supports more than 70
        species.
Depends: R (>= 4.1.0)
Imports: enrichit, gson, AnnotationDbi, GOSemSim (> 2.37.0), methods,
        utils, AnnotationHub, MeSHDbi, yulab.utils (>= 0.1.5)
Suggests: knitr, rmarkdown, prettydoc
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
URL: https://yulab-smu.top/biomedical-knowledge-mining-book/
BugReports: https://github.com/GuangchuangYu/meshes/issues
biocViews: Annotation, Clustering, MultipleComparison, Software
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake make libicu-dev libpng-dev libuv1-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:44:34 UTC
RemoteUrl: https://github.com/bioc/meshes
RemoteRef: HEAD
RemoteSha: 5e7025fca41b7fd0660f32808e61f1297db1133a
NeedsCompilation: no
Packaged: 2026-05-30 07:41:57 UTC; root
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Built: R 4.6.0; ; 2026-05-30 07:43:40 UTC; windows
