Package: enrichViewNet
Type: Package
Version: 1.11.0
Date: 2023-08-12
Title: From functional enrichment results to biological networks
Description: This package enables the visualization of functional
        enrichment results as network graphs. First the package enables
        the visualization of enrichment results, in a format
        corresponding to the one generated by gprofiler2, as a
        customizable Cytoscape network. In those networks, both gene
        datasets (GO terms/pathways/protein complexes) and genes
        associated to the datasets are represented as nodes. While the
        edges connect each gene to its dataset(s). The package also
        provides the option to create enrichment maps from functional
        enrichment results. Enrichment maps enable the visualization of
        enriched terms into a network with edges connecting overlapping
        genes.
Authors@R: c(person("Astrid", "Deschênes", email = "adeschen@hotmail.com",
    role=c("aut", "cre"), comment=c(ORCID = "0000-0001-7846-6749")), 
    person("Pascal", "Belleau", email = "pascal_belleau@hotmail.com",
    role=c("aut"), comment = c(ORCID = "0000-0002-0802-1071")), 
    person("Robert L.", "Faure", email="robert.faure@crchudequebec.ulaval.ca",
    role=c("aut"), comment=c(ORCID="0000-0003-1798-4723")), 
    person("Maria J.", "Fernandes", 
    email="maria.fernandes@crchudequebec.ulaval.ca", role = c("aut"), 
    comment=c(ORCID="0000-0002-3973-025X")),
    person(given="Alexander", family="Krasnitz", email="krasnitz@cshl.edu",
    role=c("aut")),
    person(given="David A.", family="Tuveson",
    email="dtuveson@cshl.edu", 
    role=c("aut"), comment=c(ORCID="0000-0002-8017-2712")))
Encoding: UTF-8
License: Artistic-2.0
Depends: R (>= 4.2.0)
Imports: gprofiler2, strex, RCy3, jsonlite, stringr, enrichplot,
        igraph, reshape2, methods
Suggests: BiocStyle, knitr, rmarkdown, ggplot2, scatterpie, ggtangle,
        ggrepel, testthat, ggnetwork, magick
biocViews: BiologicalQuestion, Software, Network, NetworkEnrichment, GO
VignetteBuilder: knitr
URL: https://github.com/adeschen/enrichViewNet,
        https://adeschen.github.io/enrichViewNet/
BugReports: https://github.com/adeschen/enrichViewNet/issues
RoxygenNote: 7.3.3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 libzmq3-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:01:49 UTC
RemoteUrl: https://github.com/bioc/enrichViewNet
RemoteRef: HEAD
RemoteSha: 6c5350e130e04ea77483693b37f42267b4f22e5e
NeedsCompilation: no
Packaged: 2026-05-05 09:15:50 UTC; root
Author: Astrid Deschênes [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7846-6749>),
  Pascal Belleau [aut] (ORCID: <https://orcid.org/0000-0002-0802-1071>),
  Robert L. Faure [aut] (ORCID: <https://orcid.org/0000-0003-1798-4723>),
  Maria J. Fernandes [aut] (ORCID:
    <https://orcid.org/0000-0002-3973-025X>),
  Alexander Krasnitz [aut],
  David A. Tuveson [aut] (ORCID: <https://orcid.org/0000-0002-8017-2712>)
Maintainer: Astrid Deschênes <adeschen@hotmail.com>
Built: R 4.6.0; ; 2026-05-05 09:23:33 UTC; windows
