Package: bamsignals
Type: Package
Title: Extract read count signals from bam files
Version: 1.45.1
Date: 2026-05-21
Authors@R: c( person(given="Alessandro",family="Mammana",
        email="mammana@molgen.mpg.de", role=c("aut", "cre")),
        person(given="Johannes",family="Helmuth",
        email="johannes.helmuth@laborberlin.com", role=c("aut")))
Author: Alessandro Mammana [aut, cre], Johannes Helmuth [aut]
Maintainer: Johannes Helmuth <johannes.helmuth@laborberlin.com>
Description: This package allows to efficiently obtain count vectors
        from indexed bam files. It counts the number of reads in given
        genomic ranges and it computes reads profiles and coverage
        profiles. It also handles paired-end data.
License: GPL-2
Depends: R (>= 3.5.0)
Imports: methods, BiocGenerics, Rcpp (>= 0.10.6), IRanges,
        GenomicRanges
Suggests: testthat (>= 0.9), Rsamtools, BiocStyle, knitr, rmarkdown
LinkingTo: Rcpp, Rhtslib (>= 1.13.1)
SystemRequirements: GNU make
biocViews: DataImport, Sequencing, Coverage, Alignment
VignetteBuilder: knitr
NeedsCompilation: yes
RoxygenNote: 5.0.1
URL: https://github.com/lamortenera/bamsignals
BugReports: https://github.com/lamortenera/bamsignals/issues
Config/pak/sysreqs: make libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-21 15:28:44 UTC
RemoteUrl: https://github.com/bioc/bamsignals
RemoteRef: HEAD
RemoteSha: 80ce5c52a4249962c07c65a4871824e58dab5590
Packaged: 2026-06-02 23:37:36 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2026-06-02 23:39:33 UTC; windows
Archs: x64
