# Generated by roxygen2: do not edit by hand

export(bayes_reactome)
export(cnetplot)
export(dotplot)
export(emapplot)
export(enrichPathway)
export(geneID)
export(geneInCategory)
export(gsePathway)
export(gseaplot)
export(gson_Reactome)
export(heatplot)
export(nsePathway)
export(prepareReactomeNetwork)
export(ridgeplot)
export(viewPathway)
importClassesFrom(enrichit,enrichResult)
importClassesFrom(enrichit,gseaResult)
importClassesFrom(enrichit,nseaResult)
importFrom(AnnotationDbi,
  columns,
  mapIds
)
importFrom(Matrix,sparseMatrix)
importFrom(enrichit,
  EXTID2NAME,
  geneID,
  geneInCategory,
  nsea_gson,
  prepare_network,
  setReadable
)
importFrom(enrichplot,
  cnetplot,
  dotplot,
  emapplot,
  gseaplot,
  heatplot,
  ridgeplot
)
importFrom(ggplot2,
  aes,
  scale_color_continuous,
  scale_size,
  theme_void
)
importFrom(ggraph,
  geom_edge_link,
  geom_node_point,
  geom_node_text,
  ggraph
)
importFrom(graphite,
  convertIdentifiers,
  pathwayGraph
)
importFrom(gson,gson)
importFrom(igraph,
  "E<-",
  "V<-",
  E,
  V,
  as.undirected,
  graph_from_graphnel
)
importFrom(reactome.db,
  reactomeEXTID2PATHID,
  reactomePATHID2EXTID,
  reactomePATHID2NAME
)
importFrom(utils,
  getFromNamespace,
  stack
)
importFrom(yulab.utils,
  with_cache,
  yulab_msg
)
importMethodsFrom(AnnotationDbi,as.list)
importMethodsFrom(AnnotationDbi,keys)
importMethodsFrom(enrichit,show)
importMethodsFrom(enrichit,summary)
