Differential Expression Analysis with Long Read RNA-Seq Data

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Documentation for package ‘LRDE’ version 1.1.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

LRDE-package	LRDE: Differential Expression Analysis for Long-Read RNA-Seq Data
hurdle.LRT	Likelihood Ratio Test for Hurdle Negative Binomial Model
hurdle.Wald.Test	Wald Test for Hurdle Negative Binomial Model
hurdle_LRT.dist	Distributional Likelihood Ratio Test for Hurdle Negative Binomial Model
hurdle_LRT.mean	Mean-Based Likelihood Ratio Test for Hurdle Negative Binomial Model
hurdle_Wald_Test.dist	Distributional Wald Test for Hurdle Negative Binomial Model
hurdle_Wald_Test.mean	Mean-Based Wald Test for Hurdle Negative Binomial Model
LRDE	LRDE: Differential Expression Analysis for Long-Read RNA-Seq Data
prepareDGE	Prepare Count Data for Differential Expression Analysis
sizeFactorsEst	Estimate Size Factors for Normalization
tagwiseEst	Tag-wise Dispersion Estimation for Hurdle Negative Binomial Model