Package: EGSEA
Title: Ensemble of Gene Set Enrichment Analyses
Version: 1.41.0
Authors@R: 
        c(person(given="Monther", family="Alhamdoosh", role=c("aut", "cre"),
                email="m.hamdoosh@gmail.com"),
          person(given="Luyi", family="Tian", role=c("aut")),
          person(given="Milica", family="Ng", role=c("aut")),
          person("Matthew", "Ritchie",role=c("ctb"),
                    email="mritchie@wehi.edu.au"))
Description: This package implements the Ensemble of Gene Set
        Enrichment Analyses (EGSEA) method for gene set testing. EGSEA
        algorithm utilizes the analysis results of twelve prominent GSE
        algorithms in the literature to calculate collective
        significance scores for each gene set.
biocViews: ImmunoOncology, DifferentialExpression, GO, GeneExpression,
        GeneSetEnrichment, Genetics, Microarray, MultipleComparison,
        OneChannel, Pathways, RNASeq, Sequencing, Software,
        SystemsBiology, TwoChannel,Metabolomics, Proteomics, KEGG,
        GraphAndNetwork, GeneSignaling, GeneTarget, NetworkEnrichment,
        Network, Classification
Depends: R (>= 4.3.0), Biobase, gage (>= 2.14.4), AnnotationDbi, topGO
        (>= 2.16.0), pathview (>= 1.4.2)
Imports: PADOG (>= 1.6.0), GSVA (>= 1.12.0), globaltest (>= 5.18.0),
        limma (>= 3.20.9), edgeR (>= 3.6.8), HTMLUtils (>= 0.1.5),
        hwriter (>= 1.2.2), gplots (>= 2.14.2), ggplot2 (>= 1.0.0),
        safe (>= 3.4.0), stringi (>= 0.5.0), parallel, stats, metap,
        grDevices, graphics, utils, org.Hs.eg.db, org.Mm.eg.db,
        org.Rn.eg.db, RColorBrewer, methods, EGSEAdata (>= 1.3.1),
        htmlwidgets, plotly, DT
License: GPL-3
LazyLoad: yes
NeedsCompilation: no
Encoding: UTF-8
Suggests: BiocStyle, knitr, testthat
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Config/pak/sysreqs: cmake libfftw3-dev make libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:43:30 UTC
RemoteUrl: https://github.com/bioc/EGSEA
RemoteRef: HEAD
RemoteSha: c0c96af231848598863e0dded4809ffb1e6f06ae
Packaged: 2026-05-30 09:50:52 UTC; root
Author: Monther Alhamdoosh [aut, cre],
  Luyi Tian [aut],
  Milica Ng [aut],
  Matthew Ritchie [ctb]
Maintainer: Monther Alhamdoosh <m.hamdoosh@gmail.com>
Built: R 4.6.0; ; 2026-05-30 10:35:15 UTC; windows
