Package: CaMutQC
Type: Package
Title: An R Package for Comprehensive Filtration and Selection of
        Cancer Somatic Mutations
Version: 1.9.0
Authors@R: c(person(given = "Xin", family = "Wang", 
                     role = c("aut", "cre"),
                     email = "sylviawang555@gmail.com",
                     comment = c(ORCID = "0000-0002-6072-599X")))
Description: CaMutQC is able to filter false positive mutations
        generated due to technical issues, as well as to select
        candidate cancer mutations through a series of well-structured
        functions by labeling mutations with various flags. And a
        detailed and vivid filter report will be offered after
        completing a whole filtration or selection section. Also,
        CaMutQC integrates serveral methods and gene panels for Tumor
        Mutational Burden (TMB) estimation.
biocViews: Software, QualityControl, GeneTarget
Encoding: UTF-8
Suggests: knitr, rmarkdown, BiocStyle, shiny
VignetteBuilder: knitr
RoxygenNote: 7.3.3
NeedsCompilation: no
BugReports: https://github.com/likelet/CaMutQC/issues
URL: https://github.com/likelet/CaMutQC
Depends: R (>= 4.5.0)
Imports: ggplot2, dplyr, org.Hs.eg.db, vcfR, clusterProfiler, stringr,
        DT, MesKit, maftools, data.table, utils, stats, methods, tidyr
License: GPL-3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev perl
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:02:39 UTC
RemoteUrl: https://github.com/bioc/CaMutQC
RemoteRef: HEAD
RemoteSha: c28df194d7e9f1ad010314a1d74533e1594365b1
Packaged: 2026-05-29 08:33:38 UTC; root
Author: Xin Wang [aut, cre] (ORCID: <https://orcid.org/0000-0002-6072-599X>)
Maintainer: Xin Wang <sylviawang555@gmail.com>
Built: R 4.6.0; ; 2026-05-29 08:36:04 UTC; windows
