Type: Package
Package: tidybulk
Title: Brings transcriptomics to the tidyverse
Version: 2.3.3
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")),
            person("Maria", "Doyle", email = "Maria.Doyle@petermac.org",
            role = c("ctb"))
                  )
Description: This is a collection of utility functions that allow to
        perform exploration of and calculations to RNA sequencing data,
        in a modular, pipe-friendly and tidy fashion.
License: GPL-3
Depends: R (>= 4.4.0), ttservice (>= 0.3.6)
Imports: tibble, dplyr (>= 1.1.0), magrittr, tidyr, stringr, rlang,
        purrr, tidyselect, stats, parallel, utils, lifecycle, scales,
        ggplot2, SummarizedExperiment, GenomicRanges, methods,
        S4Vectors, crayon, Matrix
Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
        Rsubread, e1071, edgeR (>= 3.42.0), limma, org.Hs.eg.db,
        org.Mm.eg.db, sva, GGally, knitr, qpdf, covr, Seurat,
        KernSmooth, Rtsne, widyr, clusterProfiler, msigdbr, DESeq2,
        broom, survival, boot, betareg, tidyHeatmap, pasilla, ggrepel,
        devtools, fastmatch, functional, survminer,
        tidySummarizedExperiment, markdown, uwot, matrixStats,
        preprocessCore, igraph, EGSEA, IRanges, here, glmmSeq, pbapply,
        pbmcapply, lme4, reformulas, glmmTMB, MASS, pkgconfig,
        enrichplot, patchwork, airway
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidybulk
BugReports: https://github.com/stemangiola/tidybulk/issues
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-06 01:51:27 UTC
RemoteUrl: https://github.com/bioc/tidybulk
RemoteRef: HEAD
RemoteSha: fa381063a6c959cff52eafd4cb759cc11cb95c2f
NeedsCompilation: no
Packaged: 2026-09-06 06:27:05 UTC; root
Author: Stefano Mangiola [aut, cre],
  Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.6.1; ; 2026-09-06 06:34:20 UTC; unix
