Package: ontoProc2
Date: 2026-08-28
Title: Ontology Facilities Based on INCAtools Semantic SQL
Version: 0.99.32
Authors@R: 
    c(person(
        "Vincent", "Carey", role = c("aut", "cre"),
        email = "stvjc@channing.harvard.edu",
        comment = c(ORCID = "0000-0003-4046-0063")),
      person("Anthropic-Claude", "Sonnet4.6", role="eng"),
      person(
        "NIH NHGRI 2U24HG004059-17",
        role = "fnd"
      )
     )
Description: This package provides ontology facilities based on
        INCAtools Semantic SQL.  Tooling is provided to retrieve and
        cache SQLite databases representing curated ontologies.
        ontologyIndex ontology_index instances can be produced.
        Anthropic's Claude was used in the development of S7 classes
        and methods and in the production of documentation.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: RSQLite, DBI, BiocFileCache, R.utils, dplyr, ontologyIndex,
        ontologyPlot, graph, Rgraphviz, igraph, ggraph, ggplot2,
        graphlayouts, grid, methods, S7, utils, httr2, xml2, digest
Suggests: knitr, testthat, BiocStyle, DT, GO.db, AnnotationDbi, stringr
VignetteBuilder: knitr
biocViews: Infrastructure, DataRepresentation, Pathways, SingleCell
URL: https://github.com/vjcitn/ontoProc2
BugReports: https://github.com/vjcitn/ontoProc2/issues
Config/roxygen2/version: 8.1.0
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev
        libicu-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-03 11:08:21 UTC
RemoteUrl: https://github.com/bioc/ontoProc2
RemoteRef: HEAD
RemoteSha: f18431d2289961758a944899d775883e825f002b
NeedsCompilation: no
Packaged: 2026-09-03 18:59:31 UTC; root
Author: Vincent Carey [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4046-0063>),
  Anthropic-Claude Sonnet4.6 [eng],
  NIH NHGRI 2U24HG004059-17 [fnd]
Maintainer: Vincent Carey <stvjc@channing.harvard.edu>
Built: R 4.6.1; ; 2026-09-03 19:13:47 UTC; unix
