# Detecting Uniparental Disomy through NGS trio data

## Documentation for package ‘UPDhmm’ version 1.9.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

calculateEvents | Calculate UPD events in trio VCFs.
collapseEvents | Collapse events per sample and chromosome
hmm | HMM data for predicting UPD events in trio genomic data
identifyRecurrentRegions | Identify recurrent genomic regions across samples
markRecurrentRegions | Annotate regions as recurrent or non-recurrent
vcfCheck | Check quality parameters (optional), change IDs and encode genotypes numerically