# Generated by roxygen2: do not edit by hand

export("spatialImage<-")
export("spatialImages<-")
export("spatialLabel<-")
export("spatialLabels<-")
export("spatialMap<-")
export("spatialPoint<-")
export("spatialPoints<-")
export("spatialShape<-")
export("spatialShapes<-")
export(MultiAssaySpatialExperiment)
export(PointsLayerList)
export(RasterLayerList)
export(ShapesLayerList)
export(aggregateByRegion)
export(annotateWithRegions)
export(buildSpatialMap)
export(checkSpatialMap)
export(labelsToShapes)
export(prepMASE)
export(readCSVForMASE)
export(readCosMxMASE)
export(readGeoJSONForMASE)
export(readGeoParquetForMASE)
export(readHDF5ForMASE)
export(readMERSCOPEMASE)
export(readParquetForMASE)
export(readVisiumHDMASE)
export(readVisiumMASE)
export(readXeniumMASE)
export(shapesToLabels)
export(spatialImage)
export(spatialImageNames)
export(spatialImages)
export(spatialJoin)
export(spatialLabel)
export(spatialLabelNames)
export(spatialLabels)
export(spatialMap)
export(spatialMatch)
export(spatialOverlaps)
export(spatialPoint)
export(spatialPointNames)
export(spatialPoints)
export(spatialShape)
export(spatialShapeNames)
export(spatialShapes)
export(subsetByBoundingBox)
export(subsetByPolygon)
exportClasses(MultiAssaySpatialExperiment)
exportClasses(PointsLayerList)
exportClasses(RasterLayerList)
exportClasses(ShapesLayerList)
exportMethods("[")
exportMethods("imgData<-")
exportMethods("spatialImage<-")
exportMethods("spatialImages<-")
exportMethods("spatialLabel<-")
exportMethods("spatialLabels<-")
exportMethods("spatialMap<-")
exportMethods("spatialPoint<-")
exportMethods("spatialPoints<-")
exportMethods("spatialShape<-")
exportMethods("spatialShapes<-")
exportMethods(addImg)
exportMethods(aggregateByRegion)
exportMethods(annotateWithRegions)
exportMethods(c)
exportMethods(cbind)
exportMethods(coerce)
exportMethods(getImg)
exportMethods(imgData)
exportMethods(imgRaster)
exportMethods(imgSource)
exportMethods(mirrorImg)
exportMethods(molecules)
exportMethods(readCSVForMASE)
exportMethods(readGeoJSONForMASE)
exportMethods(readGeoParquetForMASE)
exportMethods(readHDF5ForMASE)
exportMethods(readParquetForMASE)
exportMethods(rmvImg)
exportMethods(rotateImg)
exportMethods(scaleFactors)
exportMethods(show)
exportMethods(spatialCoords)
exportMethods(spatialCoordsNames)
exportMethods(spatialImage)
exportMethods(spatialImageNames)
exportMethods(spatialImages)
exportMethods(spatialJoin)
exportMethods(spatialLabel)
exportMethods(spatialLabelNames)
exportMethods(spatialLabels)
exportMethods(spatialMap)
exportMethods(spatialMatch)
exportMethods(spatialOverlaps)
exportMethods(spatialPoint)
exportMethods(spatialPointNames)
exportMethods(spatialPoints)
exportMethods(spatialShape)
exportMethods(spatialShapeNames)
exportMethods(spatialShapes)
exportMethods(subsetByAssay)
exportMethods(subsetByBoundingBox)
exportMethods(subsetByColData)
exportMethods(subsetByColumn)
exportMethods(subsetByPolygon)
exportMethods(subsetByRow)
import(BiocGenerics)
import(methods)
importClassesFrom(MultiAssayExperiment,MultiAssayExperiment)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,DataFrame_OR_NULL)
importClassesFrom(S4Vectors,List)
importClassesFrom(S4Vectors,SimpleList)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importClassesFrom(SpatialExperiment,SpatialExperiment)
importFrom(BiocGenerics,
  cbind,
  rbind
)
importFrom(MatrixGenerics,
  rowMeans,
  rowSums
)
importFrom(MultiAssayExperiment,
  "drops<-",
  "experiments<-",
  ExperimentList,
  MultiAssayExperiment,
  drops,
  experiments,
  prepMultiAssay,
  sampleMap,
  subsetByAssay,
  subsetByColData,
  subsetByColumn,
  subsetByRow
)
importFrom(S4Vectors,
  "mcols<-",
  "metadata<-",
  DataFrame,
  SelfHits,
  SimpleList,
  from,
  isEmpty,
  isSingleNumber,
  isSingleString,
  isTRUEorFALSE,
  mcols,
  merge,
  metadata,
  nnode,
  setValidity2,
  to,
  wmsg
)
importFrom(SingleCellExperiment,
  "colPair<-",
  colPairs
)
importFrom(SpatialExperiment,
  "imgData<-",
  SpatialExperiment,
  addImg,
  getImg,
  imgData,
  imgRaster,
  imgSource,
  mirrorImg,
  molecules,
  rmvImg,
  rotateImg,
  scaleFactors,
  spatialCoords,
  spatialCoordsNames
)
importFrom(SummarizedExperiment,
  "colData<-",
  SummarizedExperiment,
  assay,
  assayNames,
  assays,
  colData,
  rowData
)
importFrom(sf,
  st_area,
  st_as_sf,
  st_as_sfc,
  st_bbox,
  st_buffer,
  st_geometry,
  st_intersects,
  st_is_valid,
  st_join,
  st_nearest_feature,
  st_polygon,
  st_read,
  st_sf,
  st_sfc
)
importFrom(stats,setNames)
importFrom(tools,
  file_ext,
  file_path_sans_ext
)
importFrom(utils,read.csv)
