Package: tidyCoverage
Title: Extract and aggregate genomic coverage over features of interest
Version: 1.9.0
Date: 2023-11-09
Authors@R: 
    person("Jacques", "Serizay", , "jacquesserizay@gmail.com", 
        role = c("aut", "cre"))
Description: `tidyCoverage` framework enables tidy manipulation of
        collections of genomic tracks and features using
        `tidySummarizedExperiment` methods. It facilitates the
        extraction, aggregation and visualization of genomic coverage
        over individual or thousands of genomic loci, relying on
        `CoverageExperiment` and `AggregatedCoverage` classes. This
        accelerates the integration of genomic track data in genomic
        analysis workflows.
License: MIT + file LICENSE
URL: https://github.com/js2264/tidyCoverage
BugReports: https://github.com/js2264/tidyCoverage/issues
biocViews: Software, Sequencing, Coverage,
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.3.0), SummarizedExperiment
Imports: S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BiocParallel,
        BiocIO, rtracklayer, methods, tidyr, tibble, ggplot2, ggrastr,
        dplyr, fansi, pillar, rlang, scales, cli, purrr, vctrs, stats
Suggests: tidySummarizedExperiment, plyranges,
        TxDb.Mmusculus.UCSC.mm10.knownGene, AnnotationHub,
        GenomicFeatures, BiocStyle, hues, knitr, rmarkdown,
        sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
LazyData: false
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libbz2-dev libicu-dev
        libjpeg-dev liblzma-dev libpng-dev libtiff-dev libwebp-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:02:13 UTC
RemoteUrl: https://github.com/bioc/tidyCoverage
RemoteRef: HEAD
RemoteSha: c3c722da2b18433b98a2e998501cf085fada7685
NeedsCompilation: no
Packaged: 2026-05-15 10:11:21 UTC; root
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>
Built: R 4.6.0; ; 2026-05-15 10:17:44 UTC; unix
