| calculate_space | Calculate Bioenergetic Indices from OCR and ECAR Data |
| glue_xfplates | Glueing mulltiple plates from a folder |
| plot_bioenergetic_space | Plot Bioenergetic Space for Each Group |
| plot_bioenergetic_trajectory | Plot Metabolic Trajectories in J-space |
| revive_output_donor_A | Dataset PBMC donor A |
| revive_xfplate | Read, Preprocess, and Validate Seahorse XF Excel File |
| sketch_assimilate_rate | Combine multiple revived xf plates into one plot for rate data |
| sketch_assimilate_raw | Combine multiple revived xf plates into one plot for raw data |
| sketch_plate | Make an overview of plate layout, with colored groups |
| sketch_rate | Generate a plot for the rate data |