Fast Donor-Weighted Pseudo-Bulk Differential Expression for
scRNA-seq
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Documentation for package ‘scFastDE’ version 0.99.3
Help Pages
| scFastDE-package | scFastDE: Fast Donor-Weighted Pseudo-Bulk DE for scRNA-seq |
| deTable | Accessor for DE table in a FDEResult |
| deTable-method | Accessor for DE table in a FDEResult |
| donorWeights | Accessor for donor weights in a FDEResult |
| donorWeights-method | Accessor for donor weights in a FDEResult |
| fastDE | Fast Vectorised Differential Expression |
| fastPseudobulk | Build Donor-Weighted Pseudo-Bulk Profiles |
| FDEResult | Constructor for FDEResult |
| FDEResult-class | FDEResult: Fast DE Result Container |
| filterSparseDonors | Filter Donors with Too Few Cells per Cell Type |
| params-method | Accessor for analysis parameters in a FDEResult |
| plotDEResults | Volcano Plot of Differential Expression Results |
| pseudobulk | Accessor for pseudo-bulk matrix in a FDEResult |
| pseudobulk-method | Accessor for pseudo-bulk matrix in a FDEResult |
| scFastDE | scFastDE: Fast Donor-Weighted Pseudo-Bulk DE for scRNA-seq |
| show-method | Show method for FDEResult |