A collection of pre-processing functions
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Documentation for package ‘preprocessCore’ version 1.75.1
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| colSummarizeAvg | Summarize the columns of matrices |
| colSummarizeAvgLog | Summarize the columns of matrices |
| colSummarizeBiweight | Summarize the columns of matrices |
| colSummarizeBiweightLog | Summarize the columns of matrices |
| colSummarizeLogAvg | Summarize the columns of matrices |
| colSummarizeLogMedian | Summarize the columns of matrices |
| colSummarizeMedian | Summarize the columns of matrices |
| colSummarizeMedianLog | Summarize the columns of matrices |
| colSummarizeMedianpolish | Summarize the columns of matrices |
| colSummarizeMedianpolishLog | Summarize the columns of matrices |
| convert.group.labels | Summarize matrix columns by row groups |
| normalize.AffyBatch.quantiles.robust | Robust Quantile Normalization |
| normalize.quantiles | Quantile Normalization |
| normalize.quantiles.determine.target | Quantile Normalization using a specified target distribution vector |
| normalize.quantiles.in.blocks | Quantile Normalization carried out separately within blocks of rows |
| normalize.quantiles.robust | Robust Quantile Normalization |
| normalize.quantiles.use.target | Quantile Normalization using a specified target distribution vector |
| rcModelMedianPolish | Fit additive row-column decomposition models |
| rcModelPLM | Fit additive row-column decomposition models |
| rcModelPLMd | Fit row-column models with group-specific row effects |
| rcModelPLMr | Fit row-column models with row and/or column robustness |
| rcModelPLMrc | Fit row-column models with row and/or column robustness |
| rcModelPLMrr | Fit row-column models with row and/or column robustness |
| rcModelWPLM | Fit additive row-column decomposition models |
| rcModelWPLMr | Fit row-column models with row and/or column robustness |
| rcModelWPLMrc | Fit row-column models with row and/or column robustness |
| rcModelWPLMrr | Fit row-column models with row and/or column robustness |
| rma.background.correct | RMA Background Correction |
| subColSummarizeAvg | Summarize matrix columns by row groups |
| subColSummarizeAvgLog | Summarize matrix columns by row groups |
| subColSummarizeBiweight | Summarize matrix columns by row groups |
| subColSummarizeBiweightLog | Summarize matrix columns by row groups |
| subColSummarizeLogAvg | Summarize matrix columns by row groups |
| subColSummarizeLogMedian | Summarize matrix columns by row groups |
| subColSummarizeMedian | Summarize matrix columns by row groups |
| subColSummarizeMedianLog | Summarize matrix columns by row groups |
| subColSummarizeMedianpolish | Summarize matrix columns by row groups |
| subColSummarizeMedianpolishLog | Summarize matrix columns by row groups |
| subrcModelMedianPolish | Fit row-column model to a matrix |
| subrcModelPLM | Fit row-column model to a matrix |
| subrcModelWPLM | Fit row-column model to a matrix |