# Generated by roxygen2: do not edit by hand

S3method(print,pepvet_batch_comparison)
export(annotate_cleavage_sites)
export(batch_compare_enzymes)
export(batch_evaluate)
export(calculate_pI)
export(calculate_peptide_mass)
export(compare_digests)
export(digest_protein)
export(digest_report)
export(evaluate_digest)
export(export_peptide_list)
export(pepvet_check)
export(pepvet_plot_config)
export(pepvet_plot_config_reset)
export(pepvet_preset)
export(pepvet_save_figure)
export(pepvet_theme_manuscript)
export(pepvet_theme_presentation)
export(plot_batch_comparison)
export(plot_cleavage_map)
export(plot_coverage_map)
export(plot_digest_profile)
export(plot_enzyme_comparison)
export(plot_gravy_landscape)
export(plot_length_distribution)
export(plot_missed_cleavage_impact)
export(plot_mz_distribution)
export(plot_pI_distribution)
export(plot_peptide_overlap_map)
export(plot_proteome_overview)
export(plot_score_diagnostics)
export(plot_weight_sensitivity)
export(recommend_enzyme)
export(score_diagnostics)
export(score_peptides)
export(sensitivity_analysis)
export(summarize_batch)
export(triage_proteins)
importFrom(Biostrings,AAStringSet)
importFrom(Biostrings,readAAStringSet)
importFrom(IRanges,end)
importFrom(IRanges,start)
importFrom(cleaver,cleavageRanges)
importFrom(cli,cat_line)
importFrom(cli,cli_abort)
importFrom(cli,cli_inform)
importFrom(cli,cli_text)
importFrom(cli,cli_warn)
importFrom(cli,col_blue)
importFrom(cli,col_green)
importFrom(cli,col_red)
importFrom(cli,col_silver)
importFrom(cli,col_yellow)
importFrom(cli,style_bold)
importFrom(cli,style_italic)
importFrom(rlang,"%||%")
importFrom(rlang,.data)
importFrom(rlang,caller_env)
importFrom(rlang,check_installed)
importFrom(stats,rgamma)
importFrom(stats,setNames)
importFrom(tibble,add_column)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tools,file_ext)
importFrom(utils,head)
