Package: pepVet
Type: Package
Title: Evaluate Proteolytic Digests for Proteomics Workflows
Version: 0.99.1
Authors@R: 
    person("Enes K. Ergin", email = "eneskemalergin@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9810-7399"))
Description: Simulates proteolytic digestion, scores the resulting peptides
    for LC-MS/MS suitability, compares candidate enzymes, and reports digest
    quality at the protein level. Supports 40 cleaver-compatible enzyme rules,
    workflow presets, peptide mass and pI calculations, sequence-local
    cleavage-efficiency annotations, and proteome-aware uniqueness scoring.
    Evaluates multi-FASTA files in batches with per-protein triage and
    proteome-level summaries. Exports peptide lists for Skyline and generic
    downstream tools and prints styled console reports.
License: MIT + file LICENSE
URL: https://github.com/LangeLab/pepVet,
        https://langelab.github.io/pepVet/
BugReports: https://github.com/LangeLab/pepVet/issues
Depends: R (>= 4.6.0)
Imports: Biostrings, cleaver, cli, IRanges, rlang, tibble
Suggests: BiocStyle, ggplot2, patchwork, ragg, testthat (>= 3.0.0),
        withr, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Proteomics, MassSpectrometry, QualityControl
Encoding: UTF-8
Config/Needs/build: BiocStyle, ggplot2, knitr, patchwork, rmarkdown
Config/Needs/check: rcmdcheck
Config/Needs/coverage: covr, ggplot2, patchwork, ragg, testthat (>=
        3.0.0), withr, xml2
Config/Needs/lint: lintr
Config/Needs/website: BiocStyle, ggplot2, knitr, patchwork, pkgdown,
        ragg, rmarkdown
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/pepVet
git_branch: devel
git_last_commit: 6582caf
git_last_commit_date: 2026-07-30
Repository: Bioconductor 3.24
Date/Publication: 2026-08-31
NeedsCompilation: no
Packaged: 2026-08-31 22:48:00 UTC; biocbuild
Author: Enes K. Ergin [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9810-7399>)
Maintainer: Enes K. Ergin <eneskemalergin@gmail.com>
Built: R 4.6.1; ; 2026-09-01 07:13:06 UTC; unix
