Package: msgbsR
Type: Package
Title: msgbsR: methylation sensitive genotyping by sequencing (MS-GBS)
        R functions
Version: 1.37.0
Date: 2025-07-24
Author: Benjamin Mayne
Maintainer: Benjamin Mayne <benjamin.mayne@adelaide.edu.au>
Depends: R (>= 3.5.0), GenomicRanges, methods
Imports: BSgenome, easyRNASeq, edgeR, GenomicAlignments,
        GenomicFeatures, Seqinfo, ggbio, ggplot2, IRanges, parallel,
        plyr, Rsamtools, R.utils, stats, SummarizedExperiment,
        S4Vectors, utils
Suggests: roxygen2, BSgenome.Rnorvegicus.UCSC.rn6
biocViews: ImmunoOncology, DifferentialMethylation, DataImport,
        Epigenetics, MethylSeq
Description: Pipeline for the anaysis of a MS-GBS experiment.
License: GPL-2
LazyLoad: yes
Collate: 'msgbsR.R' 'rawCounts.R' 'checkCuts.R' 'plotCounts.R'
        'diffMeth.R' 'plotCircos.R'
RoxygenNote: 5.0.1
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:45:42 UTC
RemoteUrl: https://github.com/bioc/msgbsR
RemoteRef: HEAD
RemoteSha: 9f01b78a20c0b4583a732e64097cc32240a771f8
NeedsCompilation: no
Packaged: 2026-05-30 09:39:14 UTC; root
Built: R 4.6.0; ; 2026-05-30 13:49:54 UTC; unix
