R Interface to CoreArray Genomic Data Structure (GDS) Files

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Documentation for package ‘gdsfmt’ version 1.49.7

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

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gdsfmt-package	R Interface to CoreArray Genomic Data Structure (GDS) files
$-method	the class of GDS file
add.gdsn	Add a new GDS node
addfile.gdsn	Add a GDS node with a file
addfolder.gdsn	Add a folder to the GDS node
append.gdsn	Append data to a specified variable
apply.gdsn	Apply functions over margins
assign.gdsn	Assign/append data to a GDS node
cache.gdsn	Caching variable data
cleanup.gds	Clean up fragments
closefn.gds	Close a GDS file
clusterApply.gdsn	Apply functions over matrix margins in parallel
cnt.gdsn	Return the number of child nodes
compression.gdsn	Modify compression mode
copyto.gdsn	Copy GDS nodes
createfn.gds	Create a GDS file
delete.attr.gdsn	Delete attribute(s)
delete.gdsn	Delete a GDS node
diagnosis.gds	Diagnose the GDS file
digest.gdsn	create hash function digests
exist.gdsn	Return whether the path exists or not
gds.class	the class of GDS file
gdsCloudHandlers	Cloud URL scheme handlers
gdsfmt	R Interface to CoreArray Genomic Data Structure (GDS) files
gdsn.class	the class of variable node in the GDS file
gdsRegisterCloudHandler	Cloud URL scheme handlers
gdsUnregisterCloudHandler	Cloud URL scheme handlers
get.attr.gdsn	Get attributes
getfile.gdsn	Output a file from a stream container
getfolder.gdsn	Get the folder
index.gdsn	Get the specified node
is.element.gdsn	whether the elements are in a set
is.sparse.gdsn	whether a sparse array or not
lasterr.gds	Return the last error message
ls.gdsn	Return the names of child nodes
moveto.gdsn	Relocate a GDS node
name.gdsn	Return the variable name of a node
objdesp.gdsn	Variable description
openfn.gds	Open a GDS file
permdim.gdsn	Array Transposition
print.gds.class	Show the information of class "gds.class" and "gdsn.class"
print.gdsn.class	Show the information of class "gds.class" and "gdsn.class"
put.attr.gdsn	Add an attribute into a GDS node
read.gdsn	Read data field of a GDS node
readex.gdsn	Read data field of a GDS node with a selection
readmode.gdsn	Switch to read mode in the compression settings
rename.gdsn	Rename a GDS node
setdim.gdsn	Set the dimension of data field
show-method	Show the information of class "gds.class" and "gdsn.class"
showfile.gds	Enumerate opened GDS files
summarize.gdsn	GDS object Summaries
sync.gds	Synchronize a GDS file
system.gds	Get the parameters in the GDS system
unload.gdsn	Unload a GDS node
write.gdsn	Write data to a GDS node