# Generated by roxygen2: do not edit by hand

export(callMethylation)
export(extractPatterns)
export(generateAmpliconReport)
export(generateBedEcdf)
export(generateBedReport)
export(generateCaptureReport)
export(generateCytosineReport)
export(generateMhlReport)
export(generateVcfReport)
export(plotPatterns)
export(preprocessBam)
export(preprocessGenome)
export(simulateBam)
importFrom(BiocGenerics,
  sort,
  width
)
importFrom(GenomicRanges,
  makeGRangesFromDataFrame,
  reduce,
  seqnames
)
importFrom(Rcpp,evalCpp)
importFrom(data.table,
  as.data.table,
  data.table,
  dcast,
  fread,
  fwrite,
  merge.data.table,
  setDT,
  setattr,
  setkey,
  setorder
)
importFrom(methods,is)
importFrom(stats,
  density,
  ecdf,
  setNames
)
importFrom(utils,
  globalVariables,
  head,
  packageVersion
)
useDynLib(epialleleR, .registration=TRUE)
