Visualization of Functional Enrichment Result
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Documentation for package ‘enrichplot’ version 1.99.7
Help Pages
| as.data.frame.compareClusterResult | Convert compareClusterResult to data frame |
| autofacet | Plotting utility functions for enrichplot package |
| barplot.enrichResult | barplot |
| cnetplot.compareClusterResult | Category-Gene-Network Plot |
| cnetplot.enrichResult | Category-Gene-Network Plot |
| cnetplot.gseaResult | Category-Gene-Network Plot |
| cnetplot.mnseaResult | Category-Gene-Network Plot |
| color_palette | Create color palette for continuous data |
| consensusmap | consensusmap |
| consensusmap-method | consensusmap |
| dotplot | dotplot |
| dotplot-method | dotplot |
| dotplot.compareClusterResult | dotplot |
| dotplot.enrichResult | dotplot |
| dotplot2 | dotplot2 |
| emapplot | emapplot |
| emapplot-method | emapplot |
| emapplot_edge_density | Diagnose enrichment-map edge density |
| enrichplot_point_shape | Predefined color palettes |
| fortify.compareClusterResult | fortify |
| fortify.enrichResult | fortify |
| fortify.mnseaResult | fortify |
| fortify.nseaResult | fortify |
| fortify_mnsea_contribution | Plot-facing helpers for 'mnseaResult' |
| fortify_mnsea_subnetwork | Plot-facing helpers for 'mnseaResult' |
| geom_gsea_gene | geom_gsea_gene |
| get_enrichplot_color | Color utility functions for enrichplot package |
| ggtable | ggtable |
| goplot | goplot |
| goplot-method | goplot |
| gseadist | gseadist |
| gseaplot | gseaplot |
| gseaplot-method | gseaplot |
| gseaplot.gseaResult | gseaplot |
| gseaplot2 | gseaplot2 |
| gsearank | gsearank |
| gsInfo | gsInfo |
| heatplot | heatplot |
| heatplot-method | heatplot |
| hplot | hplot |
| import_enrichr | import_enrichr |
| import_fgsea | import_fgsea |
| import_gprofiler2 | import_gprofiler2 |
| import_webgestalt | import_webgestalt |
| manhattanplot | manhattanplot |
| manhattanplot-method | manhattanplot |
| mechanismflow | mechanismflow |
| mechanismflow-method | mechanismflow |
| pairwise_termsim | pairwise_termsim |
| pairwise_termsim-method | pairwise_termsim |
| pairwise_termsim.compareClusterResult | pairwise_termsim |
| pairwise_termsim.enrichResult | pairwise_termsim |
| phaseplot | phaseplot |
| phaseplot-method | phaseplot |
| plotting.clusterProfile | Internal plot function for plotting compareClusterResult |
| pmcplot | pmcplot |
| prepare_cnetplot_data | Category-Gene-Network Plot |
| prepare_emapplot_data | emapplot |
| prepare_heatplot_data | heatplot |
| prepare_mnsea_cnetplot_data | Category-Gene-Network Plot |
| prepare_pairwise_termsim_data | pairwise_termsim |
| rewireplot | rewireplot |
| rewireplot-method | rewireplot |
| ridgeplot | ridgeplot |
| ridgeplot-method | ridgeplot |
| ridgeplot.gseaResult | ridgeplot |
| set_enrichplot_color | Helper function to set color scale for enrichplot |
| ssplot | ssplot |
| ssplot-method | ssplot |
| ssplot.compareClusterResult | ssplot |
| ssplot.enrichResult | ssplot |
| treeplot | treeplot |
| treeplot-method | treeplot |
| treeplot_internal | treeplot |
| upsetplot | upsetplot method |
| upsetplot,gseaResult | upsetplot method |
| upsetplot,mnseaResult | upsetplot method |
| upsetplot-method | upsetplot method |
| volplot | volplot |
| volplot-method | volplot |
| volplot.enrichResult | volplot |