# Generated by roxygen2: do not edit by hand

S3method(as.data.frame,compareClusterResult)
S3method(barplot,compareClusterResult)
S3method(barplot,enrichResult)
S3method(barplot,gseaResult)
S3method(cnetplot,compareClusterResult)
S3method(cnetplot,enrichResult)
S3method(cnetplot,gseaResult)
S3method(cnetplot,mnseaResult)
S3method(fortify,compareClusterResult)
S3method(fortify,enrichResult)
S3method(fortify,gseaResult)
S3method(fortify,mnseaResult)
S3method(fortify,nseaResult)
S3method(ggplot_add,autofacet)
S3method(gsInfo,gseaResult)
S3method(gsInfo,mnseaResult)
S3method(print,enrichplotDot)
export(as_enrichResult)
export(as_gseaResult)
export(autofacet)
export(cnetplot)
export(color_palette)
export(consensusmap)
export(dotplot)
export(dotplot2)
export(emapplot)
export(emapplot_edge_density)
export(facet_grid)
export(fortify_mnsea_contribution)
export(fortify_mnsea_subnetwork)
export(geneID)
export(geneInCategory)
export(geom_cnet_label)
export(geom_gsea_gene)
export(get_enrichplot_color)
export(ggtable)
export(ggtitle)
export(goplot)
export(gseaScores)
export(gseadist)
export(gseaplot)
export(gseaplot2)
export(gsearank)
export(heatplot)
export(hplot)
export(import_enrichr)
export(import_fgsea)
export(import_gprofiler2)
export(import_webgestalt)
export(manhattanplot)
export(mechanismflow)
export(phaseplot)
export(plot_list)
export(pmcplot)
export(rewireplot)
export(ridgeplot)
export(set_enrichplot_color)
export(ssplot)
export(theme_dose)
export(treeplot)
export(upsetplot)
export(volplot)
exportMethods(consensusmap)
exportMethods(dotplot)
exportMethods(emapplot)
exportMethods(goplot)
exportMethods(gseaplot)
exportMethods(heatplot)
exportMethods(manhattanplot)
exportMethods(mechanismflow)
exportMethods(pairwise_termsim)
exportMethods(phaseplot)
exportMethods(rewireplot)
exportMethods(ridgeplot)
exportMethods(ssplot)
exportMethods(treeplot)
exportMethods(upsetplot)
exportMethods(volplot)
import(GOSemSim)
importClassesFrom(enrichit,compareClusterResult)
importClassesFrom(enrichit,mnseaResult)
importClassesFrom(enrichit,nseaResult)
importFrom(DOSE,theme_dose)
importFrom(RColorBrewer,brewer.pal)
importFrom(aplot,plot_list)
importFrom(dplyr,
  "%>%",
  arrange,
  bind_rows,
  desc,
  group_by,
  mutate,
  slice_head,
  ungroup
)
importFrom(enrichit,
  as_enrichResult,
  as_gseaResult,
  extract_mnsea_subnetwork,
  geneID,
  geneInCategory,
  get_mnsea_contribution,
  gseaScores
)
importFrom(ggfun,"%<+%")
importFrom(ggnewscale,
  new_scale_colour,
  new_scale_fill
)
importFrom(ggplot2,
  "%+%",
  aes,
  annotation_custom,
  coord_equal,
  coord_fixed,
  coord_flip,
  element_blank,
  element_line,
  element_rect,
  element_text,
  facet_grid,
  fortify,
  geom_bar,
  geom_blank,
  geom_boxplot,
  geom_col,
  geom_density,
  geom_hline,
  geom_jitter,
  geom_line,
  geom_linerange,
  geom_point,
  geom_rect,
  geom_segment,
  geom_text,
  geom_tile,
  geom_violin,
  geom_vline,
  ggplot,
  ggplotGrob,
  ggplot_add,
  ggplot_build,
  ggplot_gtable,
  ggtitle,
  guide_colorbar,
  guide_legend,
  guides,
  labs,
  margin,
  rel,
  scale_color_continuous,
  scale_color_gradient,
  scale_color_gradientn,
  scale_color_manual,
  scale_fill_continuous,
  scale_fill_discrete,
  scale_fill_gradient2,
  scale_fill_gradientn,
  scale_fill_manual,
  scale_size,
  scale_size_continuous,
  scale_x_continuous,
  scale_x_reverse,
  scale_y_continuous,
  scale_y_discrete,
  theme,
  theme_bw,
  theme_classic,
  theme_minimal,
  theme_void,
  xlab,
  xlim,
  ylab
)
importFrom(ggrepel,
  geom_label_repel,
  geom_text_repel
)
importFrom(ggtangle,
  cnetplot,
  geom_cnet_label,
  geom_edge
)
importFrom(ggtree,
  geom_cladelab,
  geom_hilight,
  geom_tiplab,
  geom_tippoint,
  ggtree,
  gheatmap,
  groupClade
)
importFrom(graphics,barplot)
importFrom(grid,
  arrow,
  gpar,
  unit
)
importFrom(igraph,
  'E<-',
  'V<-',
  E,
  V,
  add_vertices,
  delete.edges,
  graph.empty,
  graph_from_data_frame
)
importFrom(methods,
  is,
  setGeneric,
  setOldClass
)
importFrom(purrr,map_df)
importFrom(rlang,
  .data,
  check_installed,
  sym
)
importFrom(scatterpie,
  geom_scatterpie,
  geom_scatterpie_legend
)
importFrom(stats,
  as.dist,
  cutree,
  hclust,
  quantile,
  setNames
)
importFrom(tidydr,theme_dr)
importFrom(utils,
  data,
  getFromNamespace,
  head,
  modifyList
)
importFrom(yulab.utils,
  check_input,
  get_cache_item,
  str_wrap,
  yulab_abort,
  yulab_msg,
  yulab_warn
)
