# Labels normalized cells for CyTOF data and assigns probabilities for each label

## Documentation for package ‘cytofQC’ version 2.1.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

cytofQC-package | cytofQC: Event labeling for quality control of CyTOF data
cytofHist | Returns histogram for grouped data
cytofQC | cytofQC: Event labeling for quality control of CyTOF data
cytofQCreport | Generate a cytofQC report
gbmLabel | Returns the final label assignments for a parameter using a gradient boosting machine
initial | Returns a specified object from the cytofQC SingleCellExperiment
initialBead | Preliminary bead classification
initialDead | Preliminary viability classification
initialDebris | Preliminary debris classification
initialDoublet | Preliminary doublet classification
initialGuess | General preliminary classification.
label | Returns a specified object from the cytofQC SingleCellExperiment
labelQC | Returns the final label assignments the specified parameters
modelData | Returns indices for data to be used to create the final classification model
plotInitialGuess | Plot preliminary classification from initialGuess
probs | Returns a specified object from the cytofQC SingleCellExperiment
readCytof | Read in a dataset and prepare it for analysis
rfLabel | Returns the final label assignments for a parameter using a random forest
s3vmLabel | Returns the final label assignments for a parameter using a semi-supervised support vector machine
scores | Returns a specified object from the cytofQC SingleCellExperiment
svmLabel | Returns the final label assignments for a parameter using a support vector machine
tech | Returns a specified object from the cytofQC SingleCellExperiment