annotatr-package	annotatr
annotate_regions	annotate_regions
annotations	annotations
annotatr	annotatr
annotatr-deprecated	annotatr-deprecated
annotatr_cache	annotatr_cache
build_ah_annots	build_ah_annots
build_annotations	build_annotations
build_ccre_annots	build_ccre_annots
build_cpg_annots	build_cpg_annots
build_enhancer_annots	build_enhancer_annots
build_gene_annots	build_gene_annots
build_hmm_annots	build_hmm_annots
build_lncrna_annots	build_lncrna_annots
build_mane_txdb	build_mane_txdb
build_txdb_annotations	build_txdb_annotations
build_txdb_gene_annots	build_txdb_gene_annots
builtin_annotations	builtin_annotations
builtin_annotations_table	builtin_annotations_table
builtin_genomes	builtin_genomes
cached-annotations	cached-annotations
check_annotations	check_annotations
check_regions_genome	check_regions_genome
clear_cached_annotations	clear_cached_annotations
coannotation_pairs	coannotation_pairs
download_annotation_file	download_annotation_file
expand_annotations	expand_annotations
get_annotation_rname	get_annotation_rname
get_bfc	get_bfc
get_cache_dir	get_cache_dir
get_cache_rids	get_cache_rids
get_cellline_from_code	get_cellline_from_code
get_cellline_from_shortcut	get_cellline_from_shortcut
get_chrom_aliases	get_chrom_aliases
get_genark_seqinfo	get_genark_seqinfo
get_genark_url	get_genark_url
get_gene_table	get_gene_table
get_mane_summary	get_mane_summary
get_orgdb_name	get_orgdb_name
get_txdb_name	get_txdb_name
list_cached_annotations	list_cached_annotations
load_cached_annotation	load_cached_annotation
plot_annotation	plot_annotation
plot_categorical	plot_categorical
plot_coannotations	plot_coannotations
plot_numerical	plot_numerical
plot_numerical_coannotations	plot_numerical_coannotations
randomize_regions	randomize_regions
read_annotations	read_annotations
read_ccre_bed	read_ccre_bed
read_regions	read_regions
reformat_hmm_codes	reformat_hmm_codes
save_cached_annotation	save_cached_annotation
set_genome_seqinfo	set_genome_seqinfo
standardize_mcols	standardize_mcols
strip_id_version	strip_id_version
subset_order_tbl	subset_order_tbl
summarize_annotations	summarize_annotations
summarize_categorical	summarize_categorical
summarize_genes	summarize_genes
summarize_numerical	summarize_numerical
tidy_annotations	tidy_annotations
ucsc_seqlevels	ucsc_seqlevels
