MultiAssaySpatialExperiment-package	MultiAssaySpatialExperiment-package
addImg,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
aggregateByRegion	aggregateByRegion
aggregateByRegion,MultiAssaySpatialExperiment-method	aggregateByRegion
annotateWithRegions	annotateWithRegions
annotateWithRegions,MultiAssaySpatialExperiment-method	annotateWithRegions
buildSpatialMap	buildSpatialMap
c,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-combine
cbind,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-combine
checkSpatialMap	checkSpatialMap
coerce,List,PointsLayerList-method	SpatialLayerList-class
coerce,list,PointsLayerList-method	SpatialLayerList-class
coerce,List,RasterLayerList-method	SpatialLayerList-class
coerce,list,RasterLayerList-method	SpatialLayerList-class
coerce,List,ShapesLayerList-method	SpatialLayerList-class
coerce,list,ShapesLayerList-method	SpatialLayerList-class
coerce,MultiAssaySpatialExperiment,SpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
coerce,SpatialExperiment,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
getImg,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
imgData,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
imgData<-,MultiAssaySpatialExperiment,ANY-method	MultiAssaySpatialExperiment-class
imgRaster,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
imgSource,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
labelsToShapes	labelsToShapes
mirrorImg,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
molecules,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
MultiAssaySpatialExperiment	MultiAssaySpatialExperiment-class
MultiAssaySpatialExperiment-class	MultiAssaySpatialExperiment-class
MultiAssaySpatialExperiment-combine	MultiAssaySpatialExperiment-combine
MultiAssaySpatialExperiment-SpatialExperiment	MultiAssaySpatialExperiment-SpatialExperiment
MultiAssaySpatialExperiment-subset	MultiAssaySpatialExperiment-subset
PointsLayerList	SpatialLayerList-class
PointsLayerList-class	SpatialLayerList-class
prepMASE	prepMASE
RasterLayerList	SpatialLayerList-class
RasterLayerList-class	SpatialLayerList-class
readCosMxMASE	readCosMxMASE
readCSVForMASE	readCSVForMASE
readCSVForMASE,character-method	readCSVForMASE
readGeoJSONForMASE	readGeoJSONForMASE
readGeoJSONForMASE,character-method	readGeoJSONForMASE
readGeoParquetForMASE	readGeoParquetForMASE
readGeoParquetForMASE,character-method	readGeoParquetForMASE
readHDF5ForMASE	readHDF5ForMASE
readHDF5ForMASE,character,character-method	readHDF5ForMASE
readMERSCOPEMASE	readMERSCOPEMASE
readParquetForMASE	readParquetForMASE
readParquetForMASE,character-method	readParquetForMASE
readVisiumHDMASE	readVisiumHDMASE
readVisiumMASE	readVisiumMASE
readXeniumMASE	readXeniumMASE
rmvImg,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
rotateImg,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
scaleFactors,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
ShapesLayerList	SpatialLayerList-class
ShapesLayerList-class	SpatialLayerList-class
shapesToLabels	shapesToLabels
show,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
show,PointsLayerList-method	SpatialLayerList-class
show,RasterLayerList-method	SpatialLayerList-class
show,ShapesLayerList-method	SpatialLayerList-class
spatial-accessors	spatial-accessors
spatialCoords,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
spatialCoordsNames,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-SpatialExperiment
spatialImage	spatial-accessors
spatialImage,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialImage<-	spatial-accessors
spatialImage<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialImageNames	spatial-accessors
spatialImageNames,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialImages	spatial-accessors
spatialImages,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialImages<-	spatial-accessors
spatialImages<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialJoin	spatialJoin
spatialJoin,DataFrame,DataFrame-method	spatialJoin
spatialLabel	spatial-accessors
spatialLabel,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialLabel<-	spatial-accessors
spatialLabel<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialLabelNames	spatial-accessors
spatialLabelNames,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialLabels	spatial-accessors
spatialLabels,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialLabels<-	spatial-accessors
spatialLabels<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
SpatialLayerList-class	SpatialLayerList-class
spatialMap	spatial-accessors
spatialMap,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialMap<-	spatial-accessors
spatialMap<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialMatch	spatialMatch
spatialMatch,DataFrame,DataFrame-method	spatialMatch
spatialOverlaps	spatialOverlaps
spatialOverlaps,DataFrame-method	spatialOverlaps
spatialPoint	spatial-accessors
spatialPoint,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialPoint<-	spatial-accessors
spatialPoint<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialPointNames	spatial-accessors
spatialPointNames,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialPoints	spatial-accessors
spatialPoints,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialPoints<-	spatial-accessors
spatialPoints<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialShape	spatial-accessors
spatialShape,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialShape<-	spatial-accessors
spatialShape<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialShapeNames	spatial-accessors
spatialShapeNames,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialShapes	spatial-accessors
spatialShapes,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
spatialShapes<-	spatial-accessors
spatialShapes<-,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-class
subsetByAssay,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-subset
subsetByBoundingBox	MultiAssaySpatialExperiment-subset
subsetByBoundingBox,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-subset
subsetByColData,MultiAssaySpatialExperiment,ANY-method	MultiAssaySpatialExperiment-subset
subsetByColData,MultiAssaySpatialExperiment,character-method	MultiAssaySpatialExperiment-subset
subsetByColumn,MultiAssaySpatialExperiment,ANY-method	MultiAssaySpatialExperiment-subset
subsetByPolygon	MultiAssaySpatialExperiment-subset
subsetByPolygon,MultiAssaySpatialExperiment-method	MultiAssaySpatialExperiment-subset
subsetByRow,MultiAssaySpatialExperiment,ANY-method	MultiAssaySpatialExperiment-subset
subsetByRow,MultiAssaySpatialExperiment,List-method	MultiAssaySpatialExperiment-subset
subsetByRow,MultiAssaySpatialExperiment,list-method	MultiAssaySpatialExperiment-subset
[,MultiAssaySpatialExperiment,ANY,ANY,ANY-method	MultiAssaySpatialExperiment-subset
